瀏覽代碼

更新 'tasks/spladder_merge.wdl'

master
chenqingwang 3 年之前
父節點
當前提交
495b865d98
共有 1 個檔案被更改,包括 3 行新增2 行删除
  1. +3
    -2
      tasks/spladder_merge.wdl

+ 3
- 2
tasks/spladder_merge.wdl 查看文件

command <<< command <<<
set -o pipefail set -o pipefail
set -e set -e

echo 1 > /proc/sys/vm/overcommit_memory
mkdir -p ${sample_id}/spladder_out/spladder mkdir -p ${sample_id}/spladder_out/spladder
ln -s ${bam}/*.bam ./ ln -s ${bam}/*.bam ./
--merge-strat merge_graphs \ --merge-strat merge_graphs \
--readlen 150 \ --readlen 150 \
--parallel $nt \ --parallel $nt \
--event-types exon_skip
--event-types exon_skip,intron_retention,alt_3prime,alt_5prime,mutex_exons,mult_exon_skip
find . -depth > fileList.txt find . -depth > fileList.txt
>>> >>>

Loading…
取消
儲存