更新 'tasks/spladder_merge.wdl'

tasks/spladder_merge.wdl

@@ -13,7 +13,8 @@ task spladder_merge {
     command <<<
         set -o pipefail
         set -e
-
+        echo 1 > /proc/sys/vm/overcommit_memory
+                  
         mkdir -p ${sample_id}/spladder_out/spladder
         
         ln -s ${bam}/*.bam ./
@@ -34,7 +35,7 @@ task spladder_merge {
           --merge-strat merge_graphs \
           --readlen 150 \
           --parallel $nt \
-          --event-types exon_skip
+          --event-types exon_skip,intron_retention,alt_3prime,alt_5prime,mutex_exons,mult_exon_skip
           
         find . -depth > fileList.txt
     >>>