@@ -1,25 +0,0 @@ | |||
task ballgown { | |||
File gene_abundance | |||
Array[File] ballgown | |||
String sample_id | |||
String docker | |||
String cluster | |||
String disk_size | |||
command <<< | |||
mkdir -p /cromwell_root/tmp/${sample_id} | |||
cp -r ${sep=" " ballgown} /cromwell_root/tmp/${sample_id} | |||
ballgown /cromwell_root/tmp/${sample_id} ${sample_id}.txt | |||
>>> | |||
runtime { | |||
docker: docker | |||
cluster: cluster | |||
systemDisk: "cloud_ssd 40" | |||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||
} | |||
output { | |||
File mat_expression = "${sample_id}.txt" | |||
} | |||
} |