task ballgown { | |||||
File gene_abundance | |||||
Array[File] ballgown | |||||
String sample_id | |||||
String docker | |||||
String cluster | |||||
String disk_size | |||||
command <<< | |||||
mkdir -p /cromwell_root/tmp/${sample_id} | |||||
cp -r ${sep=" " ballgown} /cromwell_root/tmp/${sample_id} | |||||
ballgown /cromwell_root/tmp/${sample_id} ${sample_id}.txt | |||||
>>> | |||||
runtime { | |||||
docker: docker | |||||
cluster: cluster | |||||
systemDisk: "cloud_ssd 40" | |||||
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | |||||
} | |||||
output { | |||||
File mat_expression = "${sample_id}.txt" | |||||
} | |||||
} |