Haonan917
2 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/Dedup.wdl
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| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| java -jar picard.jar MarkDuplicates \ | |||||
| /usr/local/jdk-20.0.1/bin/java -jar /usr/local/picard.jar MarkDuplicates \ | |||||
| -I ${sorted_bam} \ | -I ${sorted_bam} \ | ||||
| -O ${sample}.sorted.deduped.bam | -O ${sample}.sorted.deduped.bam | ||||
| -M ${sample}_dedup_metrics.txt \ | -M ${sample}_dedup_metrics.txt \ |
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