test08

tasks/Dedup.wdl

@@ -11,7 +11,7 @@ task Dedup {
 		set -o pipefail
 		set -e
 
-		java -jar picard.jar  MarkDuplicates \
+		/usr/local/jdk-20.0.1/bin/java -jar /usr/local/picard.jar  MarkDuplicates \
 					-I ${sorted_bam}  \
 					-O ${sample}.sorted.deduped.bam 
 					-M ${sample}_dedup_metrics.txt \