test07

defaults

@@ -1,6 +1,5 @@
 {
   "benchmarking_dir": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/",
-  "SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
   "fasta": "GRCh38.d1.vd1.fa",
   "BENCHMARKdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",
   "dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
@@ -15,10 +14,8 @@
   "BIGcluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
   "fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
   "FASTQSCREENdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
-  "SENTIEON_LICENSE": "192.168.0.55:8990",
-  "SENTIEONdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2019.11.28",
   "REPLACE_SENTIEON_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-replaced:1.0",
-  "DEEPVARIANT_DOCKER": "xxx",
+  "DEEPVARIANT_DOCKER": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/deepvariant:v1.5.0",
   "QUALIMAPdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
   "vcf_D5": "",
   "benchmark_region": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/Quartet.high.confidence.region.v202103.bed",