@@ -26,7 +26,7 @@ task deduped_Metrics { | |||
-I ${Dedup_bam} \ | |||
-O ${sample}_deduped_QualityYield.txt | |||
/usr/local/jdk-20.0.1/bin/java -jar /usr/local/picard.jar CollectWgsMetrics | |||
/usr/local/jdk-20.0.1/bin/java -jar /usr/local/picard.jar CollectWgsMetrics \ | |||
-I ${Dedup_bam} \ | |||
-O ${sample}_deduped_WgsMetricsAlgo.txt \ | |||
-R ${ref_dir}/${fasta} \ |