Haonan917
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tasks/deduped_Metrics.wdl
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| -I ${Dedup_bam} \ | -I ${Dedup_bam} \ | ||||
| -O ${sample}_deduped_QualityYield.txt | -O ${sample}_deduped_QualityYield.txt | ||||
| /usr/local/jdk-20.0.1/bin/java -jar /usr/local/picard.jar CollectWgsMetrics | |||||
| /usr/local/jdk-20.0.1/bin/java -jar /usr/local/picard.jar CollectWgsMetrics \ | |||||
| -I ${Dedup_bam} \ | -I ${Dedup_bam} \ | ||||
| -O ${sample}_deduped_WgsMetricsAlgo.txt \ | -O ${sample}_deduped_WgsMetricsAlgo.txt \ | ||||
| -R ${ref_dir}/${fasta} \ | -R ${ref_dir}/${fasta} \ |
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