Haonan917
1 year ago
2 changed files with 4 additions and 3 deletions
+ 2
- 1
defaults
View File
| @@ -25,5 +25,6 @@ | |||
| "dbsnp": "dbsnp_146.hg38.vcf", | |||
| "MENDELIANdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/vbt:v1.1", | |||
| "DIYdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:1.5", | |||
| "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/" | |||
| "ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", | |||
| "pl": "ILLUMINA" | |||
| } | |||
+ 2
- 2
workflow.wdl
View File
| @@ -190,8 +190,8 @@ workflow {{ project_name }} { | |||
| input: | |||
| fasta=fasta, | |||
| ref_dir=ref_dir, | |||
| realigned_bam=Realigner_M8.realigner_bam, | |||
| realigned_bam_index=Realigner_M8.realigner_bam_index, | |||
| realigned_bam=Realigner_D5.realigner_bam, | |||
| realigned_bam_index=Realigner_D5.realigner_bam_index, | |||
| db_mills=db_mills, | |||
| dbmills_dir=dbmills_dir, | |||
| dbsnp=dbsnp, | |||
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