Haonan917
1 year ago
1 changed files with 2 additions and 1 deletions
+ 2
- 1
tasks/Dedup.wdl
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| @@ -15,7 +15,8 @@ task Dedup { | |||
| -I ${sorted_bam} \ | |||
| -O ${sample}.sorted.deduped.bam \ | |||
| -M ${sample}_dedup_metrics.txt \ | |||
| --REMOVE_DUPLICATES | |||
| --REMOVE_DUPLICATES \ | |||
| --VALIDATION_STRINGENCY LENIENT | |||
| /usr/local/samtools-1.17/bin/samtools index -@ $(nproc) -o ${sample}.sorted.deduped.bam.bai ${sample}.sorted.deduped.bam | |||
| >>> | |||
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