Haonan917
pirms 2 gadiem
1 mainītis faili ar 2 papildinājumiem un 1 dzēšanām
+ 2
- 1
tasks/Dedup.wdl
Parādīt failu
| -I ${sorted_bam} \ | -I ${sorted_bam} \ | ||||
| -O ${sample}.sorted.deduped.bam \ | -O ${sample}.sorted.deduped.bam \ | ||||
| -M ${sample}_dedup_metrics.txt \ | -M ${sample}_dedup_metrics.txt \ | ||||
| --REMOVE_DUPLICATES | |||||
| --REMOVE_DUPLICATES \ | |||||
| --VALIDATION_STRINGENCY LENIENT | |||||
| /usr/local/samtools-1.17/bin/samtools index -@ $(nproc) -o ${sample}.sorted.deduped.bam.bai ${sample}.sorted.deduped.bam | /usr/local/samtools-1.17/bin/samtools index -@ $(nproc) -o ${sample}.sorted.deduped.bam.bai ${sample}.sorted.deduped.bam | ||||
| >>> | >>> |
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