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更新 'tasks/starfusion.wdl'

add result
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biochenglinliu 4 years ago
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      tasks/starfusion.wdl

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tasks/starfusion.wdl View File

--right_fq ${fastq2} \ --right_fq ${fastq2} \
--CPU 4 \ --CPU 4 \
--output_dir ${sample_id}/output --output_dir ${sample_id}/output

tar -zcvf ${sample_id}_output/${sample_id}_FusionInspector-validate.tgz ${sample_id}_output/FusionInspector-validate

>>> >>>
runtime { runtime {


output { output {
Array[File] starfusion_result=glob("${sample_id}/output/*.tsv") Array[File] starfusion_result=glob("${sample_id}/output/*.tsv")
Array[File] starfusion_bam=glob("${sample_id}_output/*.bam")
Array[File] starfusion_tab=glob("${sample_id}_output/*.tab")
Array[File] starfusion_junction=glob("${sample_id}_output/*.junction")
Array[File] starfusion_out=glob("${sample_id}_output/*.out")
Array[File] starfusion_tgz=glob("${sample_id}_output/*.tgz")
} }


} }

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