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File tumorBAM_bai |
|
|
File tumorBAM_bai |
|
|
File hlas |
|
|
File hlas |
|
|
File ascat |
|
|
File ascat |
|
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|
|
String docker |
|
|
String docker |
|
|
String cluster |
|
|
String cluster |
|
|
String disk_size |
|
|
String disk_size |
|
|
|
|
|
|
|
|
command <<< |
|
|
command <<< |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
set -o pipefail |
|
|
set -o pipefail |
|
|
set -e |
|
|
set -e |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
now_path=`pwd` |
|
|
now_path=`pwd` |
|
|
echo $now_path > $now_path/test.txt |
|
|
echo $now_path > $now_path/test.txt |
|
|
mkdir -p ./ana/${sample_id}/ |
|
|
mkdir -p ./ana/${sample_id}/ |
|
|
|
|
|
|
|
|
tar -zcvf ./ana/${sample_id}_output.tgz ./ana/${sample_id}_output |
|
|
tar -zcvf ./ana/${sample_id}_output.tgz ./ana/${sample_id}_output |
|
|
|
|
|
|
|
|
>>> |
|
|
>>> |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
runtime { |
|
|
runtime { |
|
|
docker : docker |
|
|
docker : docker |
|
|
cluster: cluster |
|
|
cluster: cluster |