@@ -6,16 +6,16 @@ task lohhla { | |||
File tumorBAM_bai | |||
File hlas | |||
File ascat | |||
String docker | |||
String cluster | |||
String disk_size | |||
command <<< | |||
set -o pipefail | |||
set -e | |||
now_path=`pwd` | |||
echo $now_path > $now_path/test.txt | |||
mkdir -p ./ana/${sample_id}/ | |||
@@ -49,7 +49,7 @@ task lohhla { | |||
tar -zcvf ./ana/${sample_id}_output.tgz ./ana/${sample_id}_output | |||
>>> | |||
runtime { | |||
docker : docker | |||
cluster: cluster |