更新 'workflow.wdl'

dir to fastq

workflow.wdl

@@ -2,7 +2,8 @@ import "./tasks/fusioncatcher.wdl" as fusioncatcher
 
 workflow {{ project_name }} {
     String sample_id
-    File sample_fastq_dir
+    File fastq1
+    File fastq2
     File fusioncatcher_database_dir
 
     String fusioncatcher_docker
@@ -12,7 +13,8 @@ workflow {{ project_name }} {
         call fusioncatcher.fusioncatcher as fusioncatcher {
                 input:	
                 sample_id=sample_id,
-                sample_fastq_dir=sample_fastq_dir,
+                fastq1=fastq1,
+                fastq2=fastq2,
                 database_dir=fusioncatcher_database_dir,
                 docker=fusioncatcher_docker,
                 cluster=fusioncatcher_cluster,