更新 'tasks/fusioncatcher.wdl'

fastq

tasks/fusioncatcher.wdl

@@ -12,15 +12,13 @@ task fusioncatcher{
 	
         set -o pipefail
         set -e
-        mkdir -p ./input/
-        mkdir -p ./output/
-        cp ${fastq1} ./input/
-        cp ${fastq2} ./input/
+
+        mkdir ./output/
 
         /software/fusioncatcher/bin/fusioncatcher \
             -d ${database_dir} \
             -p 4 \
-            --input ./input \
+            --input ${fastq1},${fastq2} \
             --output ./output
 
     >>>