更新 'tasks/teprof_s1.wdl'

16

tasks/teprof_s1.wdl

             --outFileNamePrefix ./${sample_id}.
 
        samtools view -@ 16 -q 255 -h ${sample_id}.Aligned.sortedByCoord.out.bam > ${sample_id}.filtered.Aligned.sortedByCoord.out.bam
-       stringtie -p 8 ${sample_id}.filtered.Aligned.sortedByCoord.out.bam -o ${sample_id}.Aligned.sortedByCoord.out.gtf -m 100 -c 1 --rf
+       stringtie -p 16 ${sample_id}.filtered.Aligned.sortedByCoord.out.bam -o ${sample_id}.Aligned.sortedByCoord.out.gtf -m 100 -c 1 --rf
        python /database/rnapipelinerefhg38/rnapipeline/rmskhg38_annotate_gtf_update_test_tpm.py ${sample_id}.Aligned.sortedByCoord.out.gtf /database/rnapipelinerefhg38/rnapipeline/arguments.txt
 
        python /database/rnapipelinerefhg38/rnapipeline/annotationtpmprocess.py ${sample_id}.Aligned.sortedByCoord.out.gtf_annotated_filtered_test