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更新 'tasks/starfusion.wdl'

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biochenglinliu 3 年前
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共有 1 个文件被更改,包括 0 次插入3 次删除
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      tasks/starfusion.wdl

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tasks/starfusion.wdl 查看文件

mv ${sample_id}/output/star-fusion.fusion_predictions.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.tsv mv ${sample_id}/output/star-fusion.fusion_predictions.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.tsv
mv ${sample_id}/output/star-fusion.fusion_predictions.abridged.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.tsv mv ${sample_id}/output/star-fusion.fusion_predictions.abridged.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.tsv
mv ${sample_id}/output/star-fusion.fusion_predictions.abridged.coding_effect.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.coding_effect.tsv mv ${sample_id}/output/star-fusion.fusion_predictions.abridged.coding_effect.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.coding_effect.tsv
mv ${sample_id}/output/Chimeric.out.junction ${sample_id}/output/${sample_id}_Chimeric.out.junction
cp ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.tsv cp ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.tsv
cp ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv cp ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv
output { output {
Array[File] starfusion_result=glob("${sample_id}/output/${sample_id}_star-fusion*") Array[File] starfusion_result=glob("${sample_id}/output/${sample_id}_star-fusion*")
Array[File] finspector_result=glob("${sample_id}/output/${sample_id}_finspector*") Array[File] finspector_result=glob("${sample_id}/output/${sample_id}_finspector*")
Array[File] starfusion_tab=glob("${sample_id}/output/*.tab")
Array[File] starfusion_junction=glob("${sample_id}/output/*.junction")
Array[File] starfusion_out=glob("${sample_id}/output/*.out") Array[File] starfusion_out=glob("${sample_id}/output/*.out")
Array[File] starfusion_tgz=glob("${sample_id}/output/*.tgz") Array[File] starfusion_tgz=glob("${sample_id}/output/*.tgz")
} }

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