更新 'tasks/starfusion.wdl'

result

tasks/starfusion.wdl

@@ -26,7 +26,6 @@ task starfusion{
         mv  ${sample_id}/output/star-fusion.fusion_predictions.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.tsv
         mv  ${sample_id}/output/star-fusion.fusion_predictions.abridged.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.tsv
         mv  ${sample_id}/output/star-fusion.fusion_predictions.abridged.coding_effect.tsv ${sample_id}/output/${sample_id}_star-fusion.fusion_predictions.abridged.coding_effect.tsv
-        mv  ${sample_id}/output/Chimeric.out.junction ${sample_id}/output/${sample_id}_Chimeric.out.junction
        
         cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.tsv
         cp  ${sample_id}/output/FusionInspector-validate/finspector.FusionInspector.fusions.abridged.tsv ${sample_id}/output/${sample_id}_finspector.FusionInspector.fusions.abridged.tsv
@@ -47,8 +46,6 @@ task starfusion{
     output {
         Array[File] starfusion_result=glob("${sample_id}/output/${sample_id}_star-fusion*")
         Array[File] finspector_result=glob("${sample_id}/output/${sample_id}_finspector*")
-        Array[File] starfusion_tab=glob("${sample_id}/output/*.tab")
-        Array[File] starfusion_junction=glob("${sample_id}/output/*.junction")
         Array[File] starfusion_out=glob("${sample_id}/output/*.out")
         Array[File] starfusion_tgz=glob("${sample_id}/output/*.tgz")
     }