1 changed files with 3 additions and 3 deletions
+ 3
- 3
tasks/arriba.wdl
View File
| gzip -c ${fastq2} >${sample_id}_R2.fastq.gz | gzip -c ${fastq2} >${sample_id}_R2.fastq.gz | ||||
| mkdir ./output/ | mkdir ./output/ | ||||
| echo ${star_index_dir} >output/a.txt | |||||
| echo ${STAR_INDEX_DIR} >output/a.txt | |||||
| echo ${fastq1} >> output/a.txt | echo ${fastq1} >> output/a.txt | ||||
| echo ${fastq2} >> output/a.txt | echo ${fastq2} >> output/a.txt | ||||
| echo ${sample_id} >> output/a.txt | echo ${sample_id} >> output/a.txt | ||||
| echo ${assembly_fa} >> output/a.txt | |||||
| echo ${annotation_gtf} >> output/a.txt | |||||
| echo ${ASSEMBLY_FA} >> output/a.txt | |||||
| echo ${ANNOTATION_GTF} >> output/a.txt | |||||
Loading…