更新 'tasks/arriba.wdl'

ANNOTATION_GTF

tasks/arriba.wdl

@@ -18,12 +18,12 @@ task arriba{
         gzip -c ${fastq2} >${sample_id}_R2.fastq.gz
         
         mkdir ./output/      
-        echo ${star_index_dir} >output/a.txt
+        echo ${STAR_INDEX_DIR} >output/a.txt
         echo ${fastq1} >> output/a.txt
         echo ${fastq2} >> output/a.txt
         echo ${sample_id} >> output/a.txt
-        echo ${assembly_fa} >> output/a.txt
-        echo ${annotation_gtf} >> output/a.txt
+        echo ${ASSEMBLY_FA} >> output/a.txt
+        echo ${ANNOTATION_GTF} >> output/a.txt