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| ### Variant calling | |||||
| This APP developed for somatic short variant discovery (SNVs + Indels). | This APP developed for somatic short variant discovery (SNVs + Indels). | ||||
| ***Supported callers*** | ***Supported callers*** | ||||
| * TNhaplotyper2 | * TNhaplotyper2 | ||||
| * TNscope | * TNscope | ||||
| The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). | The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). | ||||
| #### New version | |||||
| ### New version | |||||
| * The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. | * The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. | ||||
| * The `corealigner` step has been removed. | * The `corealigner` step has been removed. | ||||
| #### How to run this APP | |||||
| ### How to run this APP | |||||
| We recommend using choppy system and Aliyun OSS service. The command will look like this: | We recommend using choppy system and Aliyun OSS service. The command will look like this: | ||||
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