共有 1 個檔案被更改，包括 4 行新增 和 4 行删除
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- 4
workflow.wdl
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| call somatic.somatic as somatic { | call somatic.somatic as somatic { | ||||
| input: | input: | ||||
| sample=sample_id, | sample=sample_id, | ||||
| tumor_bam=tumor_BQSR.recaled_bam, | |||||
| tumor_bam_index=tumor_BQSR.recaled_bam_index, | |||||
| normal_bam=normal_BQSR.recaled_bam, | |||||
| normal_bam_index=normal_BQSR.recaled_bam_index, | |||||
| tumor_bam=tumor_Dedup.deduped_bam, | |||||
| tumor_bam_index=tumor_Dedup.deduped_bam_index, | |||||
| normal_bam=normal_Dedup.deduped_bam, | |||||
| normal_bam_index=normal_Dedup.deduped_bam_index, | |||||
| ref_dir=ref_dir, | ref_dir=ref_dir, | ||||
| fasta=fasta, | fasta=fasta, | ||||
| docker=varscan_docker, | docker=varscan_docker, |
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