2 changed files with 3 additions and 3 deletions
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- 2
tasks/TNscope.wdl
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| String SENTIEON_LICENSE | String SENTIEON_LICENSE | ||||
| File tumor_recaled_bam | File tumor_recaled_bam | ||||
| File tumor_recaled_bam_index | File tumor_recaled_bam_index | ||||
| File normal_recaled_bam | |||||
| File normal_recaled_bam_index | |||||
| File? normal_recaled_bam | |||||
| File? normal_recaled_bam_index | |||||
| String tumor_name | String tumor_name | ||||
| String normal_name | String normal_name | ||||
+ 1
- 1
workflow.wdl
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| } | } | ||||
| } | } | ||||
| if (varscan) { | |||||
| if (varscan & normal_deduped_bam != "") { | |||||
| call somatic.somatic as somatic_fb { | call somatic.somatic as somatic_fb { | ||||
| input: | input: | ||||
| sample=sample_id, | sample=sample_id, |
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