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| } | } | ||||
| output { | output { | ||||
| File TNseq_filter_vcf = "${sample}.TNseq.$typ.filter.vcf" | |||||
| File TNseq_filter_vcf_index = "${sample}.TNseq.$typ.filter.vcf.idx" | |||||
| File TNseq_vcf = "${sample}.TNseq.$typ.vcf" | |||||
| File TNseq_vcf_index = "${sample}.TNseq.$typ.vcf.idx" | |||||
| File TNseq_filter_vcf = "${sample}.TNseq.${typ}.filter.vcf" | |||||
| File TNseq_filter_vcf_index = "${sample}.TNseq.${typ}.filter.vcf.idx" | |||||
| File TNseq_vcf = "${sample}.TNseq.${typ}.vcf" | |||||
| File TNseq_vcf_index = "${sample}.TNseq.${typ}.vcf.idx" | |||||
| File contamination = "${sample}.contamination" | File contamination = "${sample}.contamination" | ||||
| File contamination_segments = "${sample}.contamination.segments" | File contamination_segments = "${sample}.contamination.segments" | ||||
| File orientation = "${sample}.orientation" | File orientation = "${sample}.orientation" |
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