1 gewijzigde bestanden met toevoegingen van 0 en 7 verwijderingen
+ 0
- 7
tasks/Haplotyper.wdl
Bestand weergeven
| INTERVAL="" | INTERVAL="" | ||||
| fi | fi | ||||
| if [ ${pon_vcf} ]; then | |||||
| PON="--pon ${pon_vcf}" | |||||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon util vcfindex ${pon_vcf} | |||||
| else | |||||
| PON="" | |||||
| fi | |||||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt \ | ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt \ | ||||
| --interval ${regions} -r ${ref_dir}/${fasta} \ | --interval ${regions} -r ${ref_dir}/${fasta} \ | ||||
| -i ${recaled_bam} -q ${recal_table}\ | -i ${recaled_bam} -q ${recal_table}\ |
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