alter workflow parameters

tasks/TNscope.wdl

@@ -12,10 +12,8 @@ task TNscope {
 	String cluster_config
 
 	String fasta
-	File? corealigner_bam
-	File? corealigner_bam_index
-	File tumor_recaled_bam
-	File tumor_recaled_bam_index
+	File corealigner_bam
+	File corealigner_bam_index
 	String dbsnp
 	String disk_size
 

tasks/TNseq.wdl

@@ -11,10 +11,8 @@ task TNseq {
 	String cluster_config
 
 	String fasta
-	File? corealigner_bam
-	File? corealigner_bam_index
-	File tumor_recaled_bam
-	File tumor_recaled_bam_index
+	File corealigner_bam
+	File corealigner_bam_index
 	String dbsnp
 	String disk_size