Update: README.md

README.md

@@ -2,7 +2,7 @@
 This APP developed for somatic short variant discovery (SNVs + Indels).
 
 ***Supported callers***
-* TNhaplotyper2
+* TNseq (TNhaplotyper2)
 * TNscope
 * VarScan
 * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated)
@@ -16,7 +16,7 @@ Variant caller can be selected by setting `ture/false` in the submitted sample.c
 The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs).
 
 ### New Releases
-* The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2.
+* The TNhaplotyper, named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2.
 * The `corealigner` step has been removed.
 * The `vcf2maf` step has been removed. Thus, the final output is the annotated `VCF`.
 

tasks/TNhaplotyper2.wdl → tasks/TNseq.wdl

@@ -1,4 +1,4 @@
-task TNhaplotyper2 {
+task TNseq {
 	File ref_dir
 	File dbsnp_dir
 	String sample