Update: inputs

workflow.wdl

 import "./tasks/Realigner.wdl" as Realigner
 import "./tasks/BQSR.wdl" as BQSR
 import "./tasks/Haplotyper.wdl" as Haplotyper
-import "./tasks/corealigner.wdl" as corealigner
 import "./tasks/TNseq.wdl" as TNseq
 import "./tasks/TNscope.wdl" as TNscope
 import "./tasks/somatic.wdl" as somatic
 import "./tasks/processSomatic.wdl" as processSomatic
 import "./tasks/somaticFilter.wdl" as somaticFilter
 import "./tasks/annovar.wdl" as annovar
-import "./tasks/vcf2maf.wdl" as vcf2maf
 
 
 workflow {{ project_name }} {