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README.md
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| This APP developed for somatic short variant discovery (SNVs + Indels). | This APP developed for somatic short variant discovery (SNVs + Indels). | ||||
| **Supported callers** | |||||
| ***Supported callers*** | |||||
| * TNhaplotyper2 | * TNhaplotyper2 | ||||
| * TNscope | * TNscope | ||||
| * VarScan | * VarScan | ||||
| * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) | * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) | ||||
| Variant caller can be selected by setting `ture/false` in the submitted sample.csv. | Variant caller can be selected by setting `ture/false` in the submitted sample.csv. | ||||
| **Types of data that can be received** | |||||
| ***Accepted data*** | |||||
| * TN matched WES | * TN matched WES | ||||
| * WGS | * WGS | ||||
| The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). | The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). | ||||
| #### New version | #### New version | ||||
| * The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. | * The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. | ||||
| * The `corealigner` step has been removed. | * The `corealigner` step has been removed. |
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