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workflow.wdl
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| cluster_config=cluster_config, | cluster_config=cluster_config, | ||||
| disk_size=disk_size | disk_size=disk_size | ||||
| } | } | ||||
| call vcf2maf.vcf2maf as snp_somatic_vcf2maf { | |||||
| input: | |||||
| sample=sample_id, | |||||
| multianno_txt=snp_somatic_annovar.multianno_txt, | |||||
| docker=maftools_docker, | |||||
| cluster_config=cluster_config, | |||||
| disk_size=disk_size | |||||
| } | |||||
| call annovar.annovar as snp_loh_annovar { | call annovar.annovar as snp_loh_annovar { | ||||
| input: | input: |
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