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tasks/index.wdl
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| String cluster_config | String cluster_config | ||||
| String disk_size | String disk_size | ||||
| String clean_bam_name = basename(bam) | |||||
| command <<< | command <<< | ||||
| samtools index ${bam} | samtools index ${bam} | ||||
| >>> | >>> | ||||
| dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/" | ||||
| } | } | ||||
| output { | output { | ||||
| File bai = "${basename bam}.bai" | |||||
| File bai = "${clean_bam_name}.bai" | |||||
| } | } | ||||
| } | } |
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