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tasks/depth.wdl
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| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| /opt/conda/bin/samtools depth -aa -b ${bed} ${bam} > ${sample_id}.depth | |||||
| /opt/conda/bin/samtools depth -b ${bed} ${bam} > ${sample_id}.depth | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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