1 gewijzigde bestanden met toevoegingen van 1 en 9 verwijderingen
+ 1
- 9
tasks/annovar.wdl
Bestand weergeven
| -operation r \ | -operation r \ | ||||
| -nastring . -vcfinput -thread $nt | -nastring . -vcfinput -thread $nt | ||||
| fi | fi | ||||
| if [ ${hg} == "hg19" ]; then | |||||
| /installations/annovar/table_annovar.pl ${vcf}\ | |||||
| ${annovar_database} -buildver ${hg} \ | |||||
| -out ${basename} -remove \ | |||||
| -protocol refGene,cytoBand,genomicSuperDups,ljb26_all,snp138,cosmic78,intervar_20170202,popfreq_all_20150413,clinvar_20190305 \ | |||||
| -operation g,r,r,f,f,f,f,f,f \ | |||||
| -nastring . -vcfinput -thread $nt | |||||
| fi | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
Laden…