per-base-depth/inputs

{
  "{{ project_name }}.sample_id": "{{ sample_id }}",
  "{{ project_name }}.raw_bam": "{{ raw_bam }}",
  "{{ project_name }}.raw_bam_idx": "{{ raw_bam_idx }}",
  "{{ project_name }}.deduped_bam": "{{ deduped_bam }}",
  "{{ project_name }}.deduped_bam_idx": "{{ deduped_bam_idx }}",
  "{{ project_name }}.regions": "{{ regions }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.docker": "{{ docker }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}"
}