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| @@ -22,5 +22,7 @@ $ choppy batch YaqingLiu/ngscheckmate_fastq-latest samples.csv -p Project [-l pr | |||
| $ choppy query -L project:Label | grep "status" | |||
| ``` | |||
| #### samples.csv | |||
| The samples.csv contains at least 3 columns: sample_id, fastq1, fastq2. | |||
| #### other parameters | |||
| - subsampling_rate: The default subsampling rate is 1. The speed is not very slow. | |||
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