get_dedup_bam/README.md

Get Dedup BAM

Author: Yaqing Liu

E-mail: yaqing.liu@outlook.com

This APP is mainly used to generate dedup bam. \ There are two steps: mapping and mark duplication.

Install

# activate choppy environment
open-choppy-env
# install app
choppy install YaqingLiu/get_dedup_bam