get_dedup_bam/README.md

# Get Dedup BAM

> Author: Yaqing Liu
>
> E-mail: yaqing.liu@outlook.com
>

This APP is mainly used to generate dedup bam. \
There are two steps: mapping and mark duplication.
## Install

```
# activate choppy environment
open-choppy-env
# install app
choppy install YaqingLiu/get_dedup_bam
```