caller-test/inputs

{
  "{{ project_name }}.sample_id": "{{ sample_id }}",
  "{{ project_name }}.tumor_bam": "{{ tumor_bam }}",
  "{{ project_name }}.tumor_bai": "{{ tumor_bai }}",
  "{{ project_name }}.tumor_table": "{{ tumor_table }}",
  "{{ project_name }}.normal_bam": "{{ normal_bam }}",
  "{{ project_name }}.normal_bai": "{{ normal_bai }}",
  "{{ project_name }}.normal_table": "{{ normal_table }}",
  "{{ project_name }}.corealigner_bam": "{{ corealigner_bam }}",
  "{{ project_name }}.corealigner_bai": "{{ corealigner_bai }}",
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}",
  "{{ project_name }}.dbsnp": "{{ dbsnp }}",
  "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "{{ SENTIEON_INSTALL_DIR }}",
  "{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
  "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
  "{{ project_name }}.db_mills": "{{ db_mills }}",
  "{{ project_name }}.germline_resource": "{{ germline_resource }}",
  "{{ project_name }}.germline_resource_tbi": "{{ germline_resource_tbi }}",
  "{{ project_name }}.sentieon_docker": "{{ sentieon_docker }}",
  "{{ project_name }}.varscan_docker": "{{ varscan_docker }}",
  "{{ project_name }}.annovar_docker": "{{ annovar_docker }}",
  "{{ project_name }}.maftools_docker": "{{ maftools_docker }}",
  "{{ project_name }}.database": "{{ database }}",
  "{{ project_name }}.regions": "{{ regions }}",
  "{{ project_name }}.interval_padding": "{{ interval_padding }}",
  "{{ project_name }}.tnseq_pon": "{{ tnseq_pon }}",
  "{{ project_name }}.tnscope_pon": "{{ tnscope_pon }}",
  "{{ project_name }}.cosmic_vcf": "{{ cosmic_vcf }}",
  "{{ project_name }}.cosmic_dir": "{{ cosmic_dir }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}",
  "{{ project_name }}.germline": {{ germline | tojson }},
  "{{ project_name }}.tnseq": {{ tnseq | tojson }},
  "{{ project_name }}.tnseqold": {{ tnseqold | tojson }},
  "{{ project_name }}.tnscope": {{ tnscope | tojson }},
  "{{ project_name }}.varscan": {{ varscan | tojson }}
}