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tasks/TNseqold.wdl
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| @@ -44,7 +44,7 @@ task TNseqold { | |||
| fi | |||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt \ | |||
| --INTERVAL -r ${ref_dir}/${fasta} \ | |||
| $INTERVAL -r ${ref_dir}/${fasta} \ | |||
| -i ${tumor_recaled_bam} -q ${tumor_recal_table} \ | |||
| -i ${normal_recaled_bam} -q ${normal_recal_table} \ | |||
| --algo TNhaplotyper \ | |||
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