File contamination_segments = "${sample}.contamination.segments" | File contamination_segments = "${sample}.contamination.segments" | ||||
File orientation = "${sample}.orientation" | File orientation = "${sample}.orientation" | ||||
} | } | ||||
} | } |
output { | output { | ||||
File TNseq_vcf= "${sample}.TNseq.old.TN.vcf" | File TNseq_vcf= "${sample}.TNseq.old.TN.vcf" | ||||
File TNseq_vcf_index = "${sample}.TNseq.old.TN.vcf.idx" | File TNseq_vcf_index = "${sample}.TNseq.old.TN.vcf.idx" | ||||
} | |||||
} | |||||
} |