Calculate the bed coverage of multiple BAM files before and after dedup
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- import "./tasks/bedtools.wdl" as bedtools
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- workflow {{ project_name }} {
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- File input_samples_file
- File bed_file
- Array[File] input_samples = read_tsv(input_samples_file)
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- call bedtools.bedtools as bedtools {
- input:
- input_samples=input_samples,
- bed_file=bed_file
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- }
- }
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