Calculate the bed coverage of multiple BAM files before and after dedup
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  1. {
  2. "{{ project_name }}.input_bam_file": "{{ input_bam_file }}",
  3. "{{ project_name }}.input_bai_file": "{{ input_bai_file }}",
  4. "{{ project_name }}.bed_file": "{{ bed_file }}",
  5. "{{ project_name }}.bedtools.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
  6. "{{ project_name }}.bedtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/bedtools:v2.27.1",
  7. "{{ project_name }}.bedtools.disk_size": "{{ disk_size }}",
  8. "{{ project_name }}.include_dup": "{{ include_dup }}"
  9. }