2 muutettua tiedostoa jossa 2 lisäystä ja 2 poistoa
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input_samples_file.tsv
Näytä tiedosto
| @@ -1,2 +1,2 @@ | |||
| oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/43061775-40e6-47e7-8f07-b961b44c596f/call-samtools/GCCACATA_S9_L001_R1_001.sorted.bam | |||
| oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/43061775-40e6-47e7-8f07-b961b44c596f/call-samtools/GCCACATA_S9_L001_R1_001.sorted.bam | |||
| oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/49bd025e-5275-4fbd-9e67-b279b08ce8b5/call-samtools/F1_S6_L001_R1_001.sorted.bam | |||
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tasks/bedtools.wdl
Näytä tiedosto
| @@ -9,7 +9,7 @@ task bedtools { | |||
| command <<< | |||
| set -e -o pipefail | |||
| cat {sep=" " input_samples}|bedtools multicov -bed ${bed_file} > revread_count.txt | |||
| cat ${sep=" " input_samples}|bedtools multicov -bed ${bed_file} > revread_count.txt | |||
| >>> | |||
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