2 arquivos alterados com 2 adições e 2 exclusões
+ 1
- 1
input_samples_file.tsv
Ver arquivo
| oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/43061775-40e6-47e7-8f07-b961b44c596f/call-samtools/GCCACATA_S9_L001_R1_001.sorted.bam | oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/43061775-40e6-47e7-8f07-b961b44c596f/call-samtools/GCCACATA_S9_L001_R1_001.sorted.bam | ||||
| oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/49bd025e-5275-4fbd-9e67-b279b08ce8b5/call-samtools/F1_S6_L001_R1_001.sorted.bam | |||||
| oss://choppy-cromwell-result/test-choppy/iseq_150pe_rnaseq_20200221_wangshangzi/49bd025e-5275-4fbd-9e67-b279b08ce8b5/call-samtools/F1_S6_L001_R1_001.sorted.bam |
+ 1
- 1
tasks/bedtools.wdl
Ver arquivo
| command <<< | command <<< | ||||
| set -e -o pipefail | set -e -o pipefail | ||||
| cat ~{sep=" " input_samples}|bedtools multicov -bed ${bed_file} > revread_count.txt | |||||
| cat {sep=" " input_samples}|bedtools multicov -bed ${bed_file} > revread_count.txt | |||||
| >>> | >>> | ||||
Carregando…