revised-bedtools-task

tasks/bedtools.wdl

@@ -9,7 +9,7 @@ task bedtools {
 
 	command <<<
 	    set -e -o pipefail
-		bedtools multicov ${sep=' ' input_samples} -bed ${bed_file} > revread_count.txt 
+		bedtools multicov -bams ${sep=' ' input_samples} -bed ${bed_file} > revread_count.txt 
 
 	>>>