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workflow.wdl
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| File input_samples_file | File input_samples_file | ||||
| File bed_file | File bed_file | ||||
| Array[Array[File]] input_samples = read_tsv(input_samples_file) | |||||
| Array[File] bam = input_samples[0] | |||||
| Array[File] bam = read_lines(input_samples_file) | |||||
| call bedtools.bedtools as bedtools { | call bedtools.bedtools as bedtools { | ||||
| input: | input: | ||||
| bam=bam, | bam=bam, |
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