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tasks/bedtools.wdl
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| @@ -13,7 +13,7 @@ task bedtools { | |||
| mkdir -p /cromwell_root/tmp/bedtools | |||
| cp ${sep=' ' bai} /cromwell_root/tmp/bedtools | |||
| cd /cromwell_root/tmp/bedtools | |||
| bedtools multicov -bams ${sep=' ' bam} -bed ${bed_file} > revread_count.txt | |||
| bedtools multicov -bams ${sep=' ' bam} -bed ${bed_file} > ~/revread_count.txt | |||
| >>> | |||
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