bcftools-merge/inputs

{
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}",
  "{{ project_name }}.dbsnp": "{{ dbsnp }}",
  "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "{{ SENTIEON_INSTALL_DIR }}",
  "{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
  "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
  "{{ project_name }}.db_mills": "{{ db_mills }}",
  "{{ project_name }}.sentieon_docker": "{{ sentieon_docker }}",
  "{{ project_name }}.annovar_docker": "{{ annovar_docker }}",
  "{{ project_name }}.vcf2maf_r_docker": "{{ vcf2maf_r_docker }}",
  "{{ project_name }}.bcftools_docker": "{{ bcftools_docker }}",
  "{{ project_name }}.database": "{{ database }}",
  "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",
  "{{ project_name }}.inputponfile": "{{ inputponfile }}",
  "{{ project_name }}.regions": "{{ regions }}",
  "{{ project_name }}.PONmode": "{{ PONmode }}",
  "{{ project_name }}.cosmic_vcf": "{{ cosmic_vcf }}",
  "{{ project_name }}.cosmic_dir": "{{ cosmic_dir }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}",
  "{{ project_name }}.set_annovar": "{{ set_annovar }}",
  "{{ project_name }}.set_vcf2maf": "{{ set_vcf2maf }}"
}